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Tutorial: How to Model a 5Å Active Site in ChimeraX
Tutorial: How to Model a 5Å Active Site in Jmol
Using iCn3D to explore a protein structure
Enzyme Active Site Modeling using Molecular Visualization Freeware | Protocol Preview
iCn3D Protein Viewer
iCn3D intro demo - viewing, analyzing, & playing (aka interacting) with macromolecular structures
Using iCn3D to look at hydrophobicity
Tutorial of iCn3D structure viewer, Part 2
Making an element color key in iCn3D
iCn3D Viewer Tutorial, Part 2
How to Find the Active Site of a Protein Using a Co-Crystallized Ligand | PDB Tutorial
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Last Updated: October 31, 2026
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Summary
As part of our JoVE manuscript on biomolecular I demonstrate some basic functions in Presenter: Dr. Jiyao Wang, NCBI. You can download the slides here: ... A supporting video for our JoVE manuscript, available now at: ... As part of our recent manuscript in JoVE, we created a supplemental video detailing the full protocol for In this example we will be looking at an SH2 domain and how it binds a peptide with a phosphorylated tyrosine. The structure has ... This shows how to color each atom by element and label the atoms with the one letter code for the element.